* 1996. Zhongxin Jiang and Toru Tomabechi. ''The Pañcakramaṭippaṇī of Muniśrībhadra: Introduction and Romanized Sanskrit Text''. Bern: Peter Lang (Schweizerische Asiengesellschaft Monographie Vol. 23).
* 2000. "Notes on Robert Thurman's Translation of the Pañcakrama". In: ''Journal of Indian Philosophy'' (28 (5-6): pp. 531-548). Netherlands: Kluwer Academic Publishers.
* 2009. Luo Hong and Toru Tomabechi. ''Candrakīrti's Vajrasattvaniṣpādanasūtra (Vajrasattvasādhana): Sanskrit and Tibetan Texts – Critically edited''. Beijing: China Tibetology Publishing House (Sanskrit texts from the Tibetan Autonomous Region No. 6); Vienna: Austrian Acadamy of Sciences Press.
+"Buddhist Thought Research" (Yanbo Bookstore, 1943), "Pan Buddhism" (2 volumes, Yanbo Bookstore, 1947-1949), "Buddhist Classic History" (Dongcheng Publishing House, 1957), "Vietnamese and Contradiction Bodhisattva Index" (Suzuki Academic Foundation, 1961), "Study on Western Region Buddhist Scriptures - Brief Introduction to Dunhuang Yishu" (Yanbo Bookstore, 1969), "Tibetan Tibetan Buddhist Scriptures" (Masterpieces Press, 1970) Year), "Translation of History Studies" (Yanbo Bookstore, 1971).
+
*''Opening the Door of Your Heart: And Other Buddhist Tales of Happiness''. Also published as ''Who Ordered This Truckload of Dung?: Inspiring Stories for Welcoming Life's Difficulties''. Wisdom Publications. ISBN 978-0861712786 (2005)
*''Mindfulness, Bliss, and Beyond: A Meditator's Handbook''. Wisdom Publications. ISBN 0-86171-275-7 (2006)
*''The Art of Disappearing: Buddha's Path to Lasting Joy''. Wisdom Publications. ISBN 0-86171-668-X (2011)
*''Don't Worry, Be Grumpy: Inspiring Stories for Making the Most of Each Moment''. Also published as ''Good? Bad? Who Knows?'' Wisdom Publications. ISBN 978-1614291671 (2014)
*''Kindfulness''. Wisdom Publications. ISBN 978-1614291992 (2016)
*''Bear Awareness: Questions and Answers on Taming Your Wild Mind''. Wisdom Publications. ISBN 978-1614292562 (2017)
*''Falling Is Flying: The Dharma of Facing Adversity''- with Chan Master Guojun. Wisdom Publications. ISBN 978-1614294252 (2019)
+"Satkarya in der Darstellung seiner buddhistischen Gegner". 8 vo. 151 pp Kohlhammer, Stuttgart-Berlin 1934.
"Sutra to the Lord of Healing" (Bhaishajya-grun Vaiduryaprabha Tathagata), 32 pp. Ed. by Chou Su-Chia and translated by Walter Liebenthal. Buddhist Scripture Series No.1, Society of Chinese Buddhists, Peiping 1936.
“The Book of Chao”. Monumenta Serica, Series XIII 8 vo. 195 pp. Peking 1948.
"Tao-sheng and His Time". Monumenta Nipponica, XI, XII, 34 pp, Tokyo 1955/6, Monograph No.17.
Walter Liebenthal: A Biography of Chu Tao-Sheng, Monumenta Nipponica Vol. 11, No. 3 (Oct., 1955), pp. 284–316.
''The World Conception of Chu Tao-Sheng''. Monumenta Nipponica, 8 vo. Nbrs.1 & 2, Tokyo 1956.
"On World Interpretations". 8vo. 88 pp. Santiniketan 1956. (appeared serially in the Visvabharati Quarterly XX. 1, 3 & 4; XXI. 1 & 4 during 1954/6.
"Chao Lun: The Treatises of Seng-Chao", 2nd Rev edition, 152 pp. Hong Kong University Press, sold by Oxford University Press ISBN 0-19-643104-2.
“Das Wu-men kuan: Zutritt nur durch die Wand / Wu-men Hui-k'ai“. 142 pp. Heidelberg: Lambert Schneider, 1977.
+
*2009. "[[A Relativity Theory of the Purity and Validity of Perception in Indo-Tibetan Buddhism]]," in: Eli Franco & Dagmar Eigner (eds.), [[Yogic Perception, Meditation, and Altered States of Consciousness]]. Vienna: [[Verlag der Österreichische Akademie der Wissenschaften]], pp. 215–237.
*2008. "[[Cross-Referential Clues for a Relative Chronology of Klong chen pa's Works]]," in [[Orna Almogi]] (ed.), [[Contributions to Tibetan Buddhist Literature]]. PIATS 2006: Tibetan Studies: [[Proceedings of the Eleventh Seminar of the International Association for Tibetan Studies]], Königswinter, 2006. [[Beiträge zur Zentralasienforschung]]. Halle: [[International Institute for Tibetan and Buddhist Studies]], pp. 195-244.
*2008. "[[Jörg Grafe, Vidyādharas: Früheste Zeit kaschmirischen Bṛhatkathā]]. Frankfurt am Main: [[Peter Lang]], 2001." Review article. [[Tantric Studies]] 1, pp. 220–222.
*2007. [[The Resolve to Become a Buddha: A Study of the Concept of Bodhicitta in Indo-Tibetan Buddhism]]. [[Studia Philologica Buddhica]], Monograph Series. Tokyo: [[The International Institute for Buddhist Studies]].
*2005. "Das dPal-yul-Kloster in Geschichte und Gegenwart: Die Wiederbelebung der klösterlichen Tradition der rNying-ma-Schule," in Buddhismus in Geschichte und Gegenwart Band 11 (Winter 2005/6): Die Geistesgeschichte des Buddhismus (II). Hamburg, pp. 213–234.
*2005. "[[The rÑiṅ-ma Interpretations of the Tathāgatagarbha Theory]]," [[Wiener Zeitschrift für die Kunde Südasiens]] 48, 2004 (appeared in 2005), pp. 171–213.
*2002. "[[An Eleventh-Century Defence of the Guhyagarbhatantra]]," in: [[Helmut Eimer]] & [[David Germano]] (eds.), [[The Many Canons of Tibetan Buddhism]]. [[PIATS 2000]]: Tibetan Studies, Leiden 2000. Leiden: [[Brill]], pp. 265–291.
*2003. "[[Einige philosophische Grundlagen der rDzogs-chen-Meditation]]," in [[Buddhismus in Geschichte und Gegenwart]] Band 8 (Winter 2002/3): [[Frauen im Buddhismus und Meditation]]. Hamburg, pp. 163–181.
*2001. "Die „Große Vollendung" (rDzogs-chen), wie sie in Rong-zom-pas Werk dargestellt wird," in Buddhismus in Geschichte und Gegenwart Band 5 (Winter 2000/1): Die Geistesgeschichte des Buddhismus (II). Hamburg, pp. 39–53.
*2000. "[[Madhyamaka aus der Sicht der rNying-ma Tradition]]," in [[Buddhismus in Geschichte und Gegenwart]] Band 4 (Sommer 2000): [[Die Geistesgeschichte des Buddhismus]] (I). Hamburg, pp. 211–223.
===Selected Publications===
Books:
* Book co-edited with Lewis Lancaster, ''Early Ch’an in China and Tibet''. (Berkeley: Asian Humanities Press, 1983).
* Book co-authored with Michael von Brueck, ''Buddhismus und Christentum: Geschichte, Konfrontation, Dialog''. Munich: Beck, 1997.
* Partial translation into English, ''Christianity and Buddhism: A Multicultural History of their Dialogue''. New York: Orbia, 2001.
* Encyclopedia Entries in ''Encyclopedia of Monasticism'', ed. William M. Johnston (Chicago London: Fitzroy Dearborn, 2000).
* Entries on: “Images: Buddhist,” “Conversion/Initiation: Buddhist,” “Scholasticism: Buddhist Spiritual Ladders,” “Master/Disciple: Buddhist,” “Governance: Buddhist,” “Hierocrat: Buddhist,” “Prophethood: Japanese Buddhist,” “Charities/Social Service: Buddhist,” “Gnostic Cosmogony: Buddhist,” “Sacred Topography: Buddhist,” “Intercession for the Dead,” “Economic Justice: Buddhist.”
* Encyclopedia Entries on. “Chinese Buddhism,” “Chinese Myth,” “Hui Shih,” “Kung-sun Lung,” “Ma-tsu Tao-i.” In ''Encyclopedia of Chinese Philosophy'', ed. Antonio Cua (New York: Routledge, 2003).
* The whole China section in ''Encyclopedia of Asian Philosophy'', ed. Oliver Leaman (London-New York: Routledge, 2002).
===Essays or Chapters in Books===
* 1984. "Symbolism of Evil in China: The K'ung-chia Myth Analyzed." ''History of Religions'', 23, 4:316-3 43.
* 1985. "Ma-tsu Tao-i and the Unfolding of Southern Zen." ''Japanese Journal of Religious Studies'', (Special Volume for Heinrich Dumoulin) 12, 4:173-192.
* 1985 (Paper). "The One-Legged and the Three-Legged." ''Asian Cultural Studies'', (International Christian University, Tokyo) 3, A:67–80.
* 1986 (Paper). "Dating the Hsiang-fa Chüeh-i Ching." ''Annual Memoirs of Otani University Shin Buddhist Comprehensive Research Institute'', 4:61–91.
* 2004. “The Earth Mother Scripture: Unmasking the Neo-Archaic.…” ''Beyond Primitivism: Indigenous Religious Traditions and Modernity'', ed. Jacob Olupona (New York: Routledge), pp. 200–213.
* 2004. “The Origin of Ming Buddhist Schism.” ''Heterodoxy in Late Imperial China'', ed. Kwang-Ching Liu and Richard Shek (Honolulu : University of HawaiiPress), pp. 109–135.
* 2003. “The Century of the Holy Man in Chinese History (316-439): The Death of Hsuan-Kao,” In ''Pacific World: Journal of the Institute of Buddhist Studies'', (Special section: “In Memory of Masatoshi Nagatomi”) Third series, 5:143–161.
*[[Mi bskyod rdo rje: Routledge Entry]]
* [[Buddhism: Critical Concepts in Religious Studies]] Edited and with a new introduction by [[Paul Williams]] (London: [[Routledge]], 2005). Eight volumes. ISBN 978-0415332262
* [[Songs of Love, Poems of Sadness]]: The Erotic Verse of the 6th Dalai Lama ([[IB Taurus]], 2004). ISBN 978-1850434795
* The Unexpected Way: On Converting from Buddhism to Catholicism (London: T & T Clark, 2002). ISBN 978-0567088307
* [[Buddhist Thought: A Complete Introduction to the Indian Tradition]] (London: [[Routledge]], 2000). ISBN 978-0415207010
* [[Altruism and Reality]]: Studies in the Philosophy of the Bodhicaryavatara (Richmond: [[Curzon Press]], 1998). ISBN 978-0700710317
* [[The Reflexive Nature of Awareness]]: A Tibetan Madhyamaka Defence (Richmond: [[Curzon Press]], 1998). ISBN 978-0700710300
* [[Mahayana Buddhism: The Doctrinal Foundations]] (London: [[Routledge]],1989). ISBN 978-0415356534
+===Papers Presented===
*2011 "Terms for Buddha-Nature in the Early Phase of Buddha-Nature Thought in India" at The XVIth Congress of the International Association of Buddhist Studies in Jinshan, Taiwan
*2011 "The Process of Awakening in Early Texts on Buddha-Nature in India" at The Workshop on Indian Buddhist Thought in 6th-7th Century China at National Chengchi University in Taipeh, Taiwan
*2010 "The Ethical Base of Socially Engaged Buddhists: Unity in Difference?" at the University of Munich, Germany
*2010 "Frieden und Gewalt im Buddhismus" at the International Symposium "Religions and World Peace: Religious Communities and their Potential for Peacebuilding and Conflict Resolution" in Osnabrück, Germany
*2010 "Socially Engaged Buddhism: Local Manifestations of a Buddhist Socio-ethical Philosophy" at the University of Oslo, Norway
*2010 "The Process of Awakening in Early Texts on Buddha-Nature in India" at the 55th International Conference of Eastern Studies in Tokyo, Japan
*2010 "Engaged Buddhism: Social Entanglement with Spiritual Gain?" at the University of British Columbia, Vancouver, Canada
*2010 "Is Violence Avoidable? On War and Peace in Indian Buddhism" at the University of British Columbia, Vancouver, Canada
*2010 "The Innovative Structure of the 'Chapter on Ethics' in the Bodhisattvabhumi" at Mahidol University, Nakhon Pathom, Thailand
*2009 "The Innovative Structure of the 'Chapter on Ethics' in the Bodhisattvabhumi" at Dharma Drum Buddhist College, Taipeh
*2009 "When Compassion Trumps Non-Violence: Mahayana Codes of Conduct for Bodhisattvas and Kings" at the Ghent Centre for Buddhist Studies, Ghent, Belgium
*2009 "'All Beings Have Buddha-Nature': the Genesis of a Central Concept in Mahayana Buddhism" at Ghent University, Belgium
*2008 "Ist der König immer ein Narr? Herrschaft und Gewalt im Buddhismus Indiens" at the University of Hamburg
*2008 "Die Ethik des Bodhisattva: Das Kapitel zum Rechten Verhalten in der Bodhisattvabhumi" at the University of Vienna, Austria
*2008 "The Chapter on Ethics in the Bodhisattvabhumi" at the conference The Yogacarabhumi and the Yogacaras (The 3rd Geumgang International Conference for Buddhist Studies) in Seoul, Korea
*2008 "Mahayana Buddhism: the Traditions of Yogacara and Tathagatagarbha" at the L'Orientale, University of Naples, Italy
*2007 "Vom gesprochenen Wort zum Manuskript: Die Schriftkultur und ihre Bedeutung für den Buddhismus Indiens" at the University of Hamburg
*2007 "The Pierced Foot: The Transformation of an Episode from the Buddha's Life" at the conference Text, Translation, and Transmission at the University of California, Berkeley
*2007 "Buddhism, War, and Violence" and discussion panel "Indological and Buddhological Intersections: German and American Approaches to the Study of Buddhism and Indian Religion" at the University of Florida, Gainesville
*2007 "Conceptions of Buddhist Kingship in South Asia" at the 2nd South and Southeast Asian Association for the Study of Culture and Religion (SSEASR) Conference in Bangkok, Thailand
*2006 "Once the Bodhisattva Was a Killer: Ethical Discourse and the Creation of History in Indian Buddhism" at the symposium The Practice of History in Asian Religions at the Colegio de Mexico, Mexico City
*2005 "The Righteous King: Buddhist Statecraft from Ideal to Realpolitik" at the University of Texas, Austin
*2005 "Looking for the Textual Origins: Buddha-Nature Thought in Indian Mahayana Buddhism" at the University of California, Los Angeles
*2005 "Violence in Early Mahayana Buddhism" at the Institute of Buddhist Studies at the Graduate Theological Union, Berkeley
*2005 "Eternal Buddhahood and Permeating Knowledge: The Origins of Buddha-Nature" at the XIXth World Congress of the Association for the History of Religions in Tokyo
*2005 "Doctrinal Justifications of Buddhist Violence: Preliminaries to a Holy War?" at the conference "The Rhetorics of Holy War" at the University of California / Graduate Theological Union, Berkeley
*2004 "Buddha-Nature in India: Ethical Stimulant, Metaphysical Rationale, or Prosyletizing Strategy?" at the University of California, Berkeley
*2003 "Beneficient Partners or Unholy Allies? Compassion and Violence in Indian Buddhism" at Stanford University
*2003 "Beneficient Partners or Unholy Allies? Compassion and Violence in Indian Buddhism" at the International Institute for Buddhist Studies in Tokyo
*2002 "Buddhism and Violence: The Early Background" at the Royal Nepal Academy in Kathmandu, Nepal
*2002 Organization of the panel "Buddhism and Violence" at The XIIIth Conference of the International Association of Buddhist Studies in Bangkok; title of own paper: "Indian Mahayanists and the Punitive Measures of a King"
*2001 "Tathagatagarbha: Der Ursprung von der Lehre der Buddha-Natur aller Lebewesen im indischen Mahayana" (Tathagatagarbha: The origin of the teaching of a buddha-nature in all living beings in Indian Mahayana) at the XXVIII. Deutscher Orientalistentag in Bamberg, Germany
*2001 "Die Frühphase der Herausbildung des Bodhisattva-Ideals im Mahayana" (The early phase of the advent of the bodhisattva ideal in the Mahayana) at the EKO-Haus der Japanischen Kultur in Düsseldorf, Germany
*2001 "Das Bodhisattva-Ideal im indischen Buddhismus" (The bodhisattva ideal in Indian Buddhism) at the Conference "Das Bodhisattva-Ideal im chinesischen Buddhismus" at the Fo-Guang-Shan-Tempel in Berlin
*2001 "Buddhismus und Gewalt" (Buddhism and violence) at the University of Hamburg in the project "Buddhismus in Geschichte und Gegenwart"
*2000 "The Kanjur stemma of the De bzhin gshegs pa'i snying po'i mdo (Tathagatagarbhasutra) including fragments from Tabo and its relation to its paracanonical translation in the 'Newark-Kanjur'" at the Ninth Seminar of the International Association for Tibetan Studies in Leiden, Holland
*2000 "Die Lehre von der Buddhanatur aller Lebewesen" (The teaching of the buddha-nature of all living beings) at the University of Hamburg in the project "Buddhismus in Geschichte und Gegenwart"
*2000 "Friedliebender Buddhismus – nur ein Mythos?" (Peaceful Buddhism – only a myth?) at the Conference "Buddhismus in Wissenschaft und Praxis" in the Vietnamese "Pagode Vien Giac" at Hannover, Germany
*1998 "The 'discovery' of a second Tibetan translation of the Tathagatagarbhasutra among the Newark Kanjur manuscripts: Its philological and philosophical implications" at the 43rd International Conference of Eastern Studies in Tokyo
*1996 "The Tathagatagarbhasutra: Some Philological and Philosophical Considerations" at the University of Kyoto, Institute for Research in Humanities
===Publications===
*2010 General editor of the Hamburg Buddhist Studies Series, vol.1: The Genesis of the Bodhisattva Ideal by Analayo, Hamburg: Hamburg University Press
*2009 Review of "Catherine Ludvik, Recontextualizing the Praises of a Godess. From the Harivamsa to Yijing's Chinese Translation of the Sutra of Golden Light, Italian School of East Asian Studies, Occasional Papers 10, Kyoto: Scuola Italiana di Studi sull' Asia Orientale 2006," in Orientalistische Literaturzeitung 104 (2009) 4–5, 562–567
*2008 "On Power and Punishment: Buddhism and Statecraft in Ancient India," in Homo Oeconomicus 25(2), 225–244
*2008 "Zur Geschichte der Abteilung für Kultur und Geschichte Indiens und Tibets," in Vom Kolonialinstitut zum Asien-Afrika-Institut. 100 Jahre Asien- und Afrikawissenschaften in Hamburg, Ludwig Paul (ed.), Gossenberg: OSTASIEN Verlag, 106–127 (together with Dorji Wangchuk)
*2007 "Conceptions of Buddhist Kingship in South Asia," in His Majesty King Bhumibol Aduyadej: Upholder of All Faiths, Institute of Language and Culture for Rural Development, Mahidol University (ed.), Nakhonpathom: Mahidol University, 121–128
*2006 Buddhism and Violence, M. Zimmermann (ed.), Lumbini: Lumbini International Research Institute, 254 pages
*2006 "Only a Fool Becomes a King: Buddhist Stances on Punishment," in Buddhism and Violence, M. Zimmermann (ed.), Lumbini: Lumbini International Research Institute, 213–242 (download PDF)
*2006 "Wie die Lehre von der Buddhanatur entstand," Tibet und Buddhismus 77 (April, Mai Juni), 20–24
*2006 Several entries in Das grosse Lexikon des Buddhismus, translated from the Japanese and revised, G. Paul and others (eds.), Munich: IUDICIUM
*2004 "War," in Encyclopedia of Buddhism, R. E. Buswell (ed.), New York: Macmillan Reference, 893–897
*2003 "Bericht über das 'Nepal Research Centre' (NRC) für den Zeitraum von April 2002 bis März 2003," Geschäftsbericht der Deutschen Morgenländischen Gesellschaft (Geschäftsjahr 2002/2003), Zeitschrift der Deutschen Morgenländischen Gesellschaft 153-2, 525–526
*2003 Review of "Ludwig Alsdorf, Kleine Schriften, 2d ed., Albrecht Wezler (ed.), Glasenapp-Stiftung Band 10, Stuttgart: Steiner 2001," Indo-Iranian Journal 46, 90–91
*2003 "A Preliminary Analysis of the Tathagatagarbhasutra as Found in the Lang Kanjur," appendix to Klaus-Dieter Mathes' "Establishing the Succession of the Sakya Lamas of Näsar Gompa and Lang Gompa in Dolpo (Nepal)," Wiener Zeitschrift für die Kunde Südasiens 47, 104–105
*2002 Together with K.-D. Mathes: "Bericht über das ‚Nepal-German Manuscript Preservation Project' (NGMPP) für den Zeitraum von April 2001 bis März 2002," Geschäftsbericht der Deutschen Morgenländischen Gesellschaft (Geschäftsjahr 2001/2002), Zeitschrift der Deutschen Morgenländischen Gesellschaft 152-2, 477–478
*2002 Several entries related to Mahayana Buddhism in Harenberg Lexikon der Religionen: die Religionen und Glaubensgemeinschaften der Welt. Ihre Bedeutung in Geschichte, Alltag und Gesellschaft, B. Budde and C. Laue-Bothen (eds.), Dortmund: Harenberg Verlag
*2002 "Buddhismus und Gewalt," in Buddhismus in Geschichte und Gegenwart, vol. 7, Continuing Academic Education, Hamburg: University of Hamburg, Asia-Africa-Institute, Department for Indian and Tibetan Studies, 101–110
*2002 A Buddha Within: The Tathagatagarbhasutra, The Earliest Exposition of the Buddha-Nature Teaching in India, Bibliotheca Philologica et Philosophica Buddhica 6, Tokyo: The International Research Institute for Advanced Buddhology, 444 pages (download PDF 78MB; low print quality: PDF 6MB; Chinese and Tibetan texts in the Thesaurus Literaturae Buddhicae)
*2002 "The Tabo Fragments and the Stemma of the Tibetan Tathagatagarbhasutra," in The Many Canons of Tibetan Buddhism. PIATS 2000: Tibetan Studies: Proceedings of the Ninth Seminar of the International Association for Tibetan Studies, Leiden 2000, Brill's Tibetan Studies Library 2/10, H. Blezer, A. McKay and C. Ramble (eds.), Leiden, Boston, Cologne: Brill, 177–196
*2000 "A Mahayanist Criticism of Arthasastra: The Chapter on Royal Ethics in the Bodhisattva-gocaropaya-visaya-vikurvana-nirdesa-sutra," Annual Report of the International Research Institute for Advanced Buddhology at Soka University for the Academic Year 1999, 177–211 (download PDF)
*2000 "Identification of a Quotation in the Ratnagotravibhagavrtti," Annual Report of the International Research Institute for Advanced Buddhology at Soka University for the Academic Year 1999, 215–216 (download PDF)
*2000 "Tathagatagarbha," in Buddhismus in Geschichte und Gegenwart, vol. 4, Continuing Academic Education, Hamburg: University of Hamburg, Asia-Africa-Institute, Department for Indian and Tibetan Studies, 235–249
*1999 "The Tathagatagarbhasutra: Its Basic Structure and Relation to the Lotus Sutra," Annual Report of the International Research Institute for Advanced Buddhology at Soka University for the Academic Year 1998, 143–168 (download PDF)
*1998 "A Second Tibetan Translation of the Tathagatagarbhasutra in the Newark Manuscript Kanjur from Bathang: A Translation of the Early Period (snga dar)," Transactions of the International Conference of Eastern Studies 43, Tokyo, 33–50
====Monographs====
* Tibetan Zen: Discovering a Lost Tradition (Boston & London: Snow Lion, 2015). ISBN 9781559394468
* Manuscripts and Travellers: The Sino-Tibetan Documents of a Tenth-Century Buddhist Pilgrim, coauthored with Imre Galambos (Berlin: de Gruyter, 2012). ISBN 9783110225648
* Tibet: A History (London: Yale University Press, 2011). ISBN 9780300154047
* Esoteric Buddhism at Dunhuang: Rites and Teachings for this Life and Beyond, co-edited with Matthew Kapstein (Leiden: Brill, 2010). ISBN 9789004182035
* Tibetan Tantric Manuscripts from Dunhuang: A Descriptive Catalogue of the Stein Collection at the British Library, co-authored with Jacob Dalton (Leiden: Brill, 2006). ISBN 9789004154223
* Approaching the Great Perfection: Simultaneous and Gradual Approaches to Dzogchen Practice in the Longchen Nyingtig (Boston: Wisdom Publications, 2004). ISBN 0861713702
====Articles====
* "The Stone Maitreya of Leh: The Rediscovery and Recovery of an Early Tibetan Monument", with André Alexander, Journal of the Royal Asiatic Society 21.4 (2011): 421–439.
* "The Prayer, the Priest and the Tsenpo: An Early Buddhist Narrative from Dunhuang", with Lewis Doney, Journal of the International Association of Buddhist Studies 30.1–2 (2007): 175–217.
* "Fragments of the Testament of Ba from Dunhuang", with Kazushi Iwao, Journal of the American Oriental Society 128.3 (2008): 477–487.
* "A Definition of Mahāyoga: Sources from the Dunhuang Manuscripts", Tantric Studies 1 (2008): 45–88.
* "The Sweet Saint and the Four Yogas: A ‘Lost’ Mahāyoga Treatise from Dunhuang", Journal of the International Association of Tibetan Studies 4 (2008 [2009]): 1-67,
* "Beyond Anonymity: Palaeographic Analyses of the Dunhuang Manuscripts", with Tom Davis and Jacob Dalton, Journal of the International Association of Tibetan Studies 3 (2007): 1-23.
* "The Early Days of the Great Perfection", Journal of the International Association of Buddhist Studies 27/1 (2004): 165–206.
* "Tibetan Dunhuang Manuscripts in China", Bulletin of the School of Oriental and African Studies 65.1 (2002): 129–139.
* "The Origin of the Headless Style (dbu med) in Tibet", in Medieval Tibeto-Burman Languages IV, ed. Nathan W. Hill (Leiden: Brill, 2012).
* "A New Look at the Invention of the Tibetan Script", in New Studies of the Old Tibetan Documents: Philology, History and Religion (Old Tibetan Documents Monograph Series, vol. III)., ed. Yoshiro Imaeda, Matthew Kapstein and Tsuguhito Takeuchi (Tokyo: ILCAA, 2011): 45–96.
* "Oral Teachings and Written Texts: Transmission and Transformation in Dunhuang", in Contributions to the Cultural History of Tibet, ed. In Matthew T. Kapstein and Brandon Dotson (Leiden: Brill, 2007): 183-208.
* "The Tibetan Avalokiteśvara Cult in the Tenth Century: Evidence from the Dunhuang Manuscripts", in Tibetan Buddhist Literature and Praxis (Proceedings of the Tenth Seminar of the IATS, 2003, Volume 4), ed. Ronald M. Davidson and Christian Wedemeyer (Leiden: Brill, 2006): 55-72.
* "Where Chan and Tantra Meet: Buddhist Syncretism in Dunhuang", with Jacob Dalton in The Silk Road: Trade, Travel, War and Faith, ed. Susan Whitfield (London: British Library Press, 2004): 61-71.
====Translations====
* Dhongthog Rinpoche, The Sakya School of Tibetan Buddhism: A History, Translated by Sam van Schaik (Somerville, MA: Wisdom Publications, Inc., 2016).
====Other====
* Matko, Marta and Sam van Schaik, Scribal Colophons in the Tibetan Manuscripts at the British Library (Prajñāpāramitā and Aparimitāyus sūtras), First Electronic Edition (London: International Dunhuang Project, 2013). http://idp.bl.uk/database/oo_cat.a4d?shortref=Matko_vanSchaik_2013;random=15506